A community effort to assess and improve drug sensitivity prediction algorithms

James C Costello (1) , Laura M Heiser , Elisabeth Georgii , Mehmet Gönen , Michael P Menden , Nicholas J Wang , Mukesh Bansal , Muhammad Ammad-Ud-Din , Petteri Hintsanen , Suleiman A Khan , John-Patrick Mpindi , Olli Kallioniemi , Antti Honkela (2) , Tero Aittokallio , Krister Wennerberg , Jean-Paul Abbuehl , Jeffrey Allen (3) , Russ B Altman (4) , Shawn Balcome , Alexis Battle , Andreas Bender (5) , Bonnie Berger , Jonathan Bernard , Madhuchhanda Bhattacharjee (6) , Krithika Bhuvaneshwar , Andrew A Bieberich , Fred Boehm , Andrea Califano , Christina Chan (7) , Beibei Chen (8) , Ting-Huei Chen (9) , Jaejoon Choi , Luis Pedro Coelho (10) , Thomas Cokelaer (11) , James C Collins , Chad J Creighton , Jike Cui (12) , Will Dampier , V Jo Davisson , Bernard De Baets , Raamesh Deshpande , Barbara Dicamillo , Murat Dundar (13) , Zhana Duren , Adam Ertel , Haoyang Fan (14) , Hongbin Fang (15) , Dan Gallahan , Robinder Gauba , Assaf Gottlieb , Michael Grau , Joe W Gray (16) , Yuriy Gusev , Min Jin Ha (17) , Leng Han , Michael Harris , Nicholas Henderson (18) , Hussein A Hejase , Krisztian Homicsko , Jack P Hou , Woochang Hwang , Adriaan P Ijzerman (19) , Bilge Karacali , Samuel Kaski , Sunduz Keles , Christina Kendziorski , Junho Kim (20) , Min Kim (21) , Youngchul Kim , David A Knowles , Daphne Koller (22) , Junehawk Lee , Jae K Lee , Eelke B Lenselink (23) , Biao Li (24) , Bin Li (24) , Jun Li , Han Liang (25) , Jian Ma , Subha Madhavan , Sean Mooney (26) , Chad L Myers (27) , Michael A Newton , John P Overington , Ranadip Pal , Jian Peng (28) , Richard Pestell (29) , Robert J Prill , Peng Qiu , Bartek Rajwa , Anguraj Sadanandam , Julio Saez-Rodriguez (11) , Francesco Sambo , Hyunjin Shin (30) , Dinah Singer , Jiuzhou Song , Lei Song (31) , Arvind Sridhar , Michiel Stock , Gustavo Stolovitzky , Wei Sun (32) , Tram Ta , Mahlet Tadesse (33) , Ming Tan , Hao Tang , Dan Theodorescu , Gianna Maria Toffolo , Aydin Tozeren , William Trepicchio , Nelle Varoquaux (34, 35) , Jean-Philippe Vert (34, 35) , Willem Waegeman , Thomas Walter (34, 35) , Qian Wan , Difei Wang , Wen Wang (36) , Yong Wang , Zhishi Wang (37) , Joerg K Wegner , Tongtong Wu (38) , Tian Xia (39) , Guanghua Xiao (40) , Yang Xie , Yanxun Xu (41) , Jichen Yang , Yuan Yuan , Shihua Zhang (42) , Xiang-Sun Zhang (43) , Junfei Zhao (44) , Chandler Zuo (45) , Herman W T Van Vlijmen , Gerard J P Van Westen , James J Collins

1 National Centre for Plasma Science and Technology (NCPST)
2 HIIT - Helsinki Institute for Information Technology
3 UOW - University of Westminster [London]
4 BMIR - Stanford Center for BioMedical Informatics Research
5 DSTO
6 NEMESIS-CRICM - Equipe NEMESIS - Centre de Recherches de l'Institut du Cerveau et de la Moelle épinière
7 Institute for Molecular Bioscience
8 NUIST - Nanjing University of Information Science and Technology
9 Department of Physics [Stockholm]
10 INESC - Instituto de Engenharia de Sistemas e Computadores
11 EMBL-EBI - European Bioinformatics Institute [Hinxton]
12 Department of Agronomy
13 Medicine Faculty
14 Faculty of anima Medicine l
15 Oxford e-Research Centre [Oxford]
16 Department of Computer Science [Alabama]
17 Roberval - Roberval
18 Centre for Inflammation Research
19 Division of Medicinal Chemistry
20 PITT - University of Pittsburgh
21 Department of Chemistry and Nano Science
22 Institute of Materials Chemistry
23 Division of Medicinal Chemistry
24 Peking Univ, Coll Urban & Environm Sci, Lab Earth Surface Proc, Beijing 100871, Peoples R China
25 Queensland Research Lab
26 CPIB - Centre for Plant Integrative Biology [Nothingham]
27 Department of Electrical and Computer Engineering
28 SUN Yatsen University
29 Sidney Kimmel Cancer Center
30 Molecular Carcinogenesis [Sutton]
31 Innovation Center for Biomedical Informatics
32 University of Leeds
33 Dipartimento di Chimica
34 Cancer et génome: Bioinformatique, biostatistiques et épidémiologie d'un système complexe
35 CBIO - Centre de Bioinformatique
36 Computer Graphics Group [Hong Kong]
37 Department of Computing [London]
38 State Key Laboratory of Virology
39 MoNOS, Huygens Laboratory
40 IMP - Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou 730000, China
41 USTB - University of Science and Technology Beijing [Beijing]
42 Dalian University of Technology
43 Chalmers University of Technology [Göteborg]
44 APS - Advanced Photon Source [ANL]
45 Beth Israel Deaconess Medical Center

Domaines: Bio-Informatique, Biologie Systémique [q-bio.QM]

James C Costello, Laura M Heiser, Elisabeth Georgii, Mehmet Gönen, Michael P Menden, et al.. A community effort to assess and improve drug sensitivity prediction algorithms. Nature Biotechnology, 2014, 32, pp.1202-1212. ⟨10.1038/nbt.2877⟩. ⟨hal-01101874⟩